BtaEX6077592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34221196-34222763:+
Coord C1 exon
chr21:34221196-34221313
Coord A exon
chr21:34221828-34221956
Coord C2 exon
chr21:34222604-34222763
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCACCTCTTCCCATGCAGTGA
3' ss Score
8.02
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTGTGGCCTCTGCAGCCCAGGCAAGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCGGCCGAGCTGGAACGGAAGGAGCGGGAGCTTCAGAACACGGTGGCCAACTTACATG
Seq A exon
TGAGAGAGAACAACTGGCCGCCCCTGCCCGTGTGGTGCCCTGTCAAGCCCTGCTTCTATCAGGACTTCTCCACAGAGATCCCTGCCGACTACCAGCGGATATGCAAGATGCTCTACTATCTCTGGATGT
Seq C2 exon
TGCATTCAGTGACTCTGTTTCTGAACCTGCTTGCCTGCCTGGCCTGGTTCTTAGTCGACACCTCCAGGGGAGTAGACTTCGGCCTCTCCATCCTGTGGTTTGTGATCTTCACCCCCTGTGCCTTCCTTTGTTGGTATCGACCCATCTATAAGGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844-'9-11,'9-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCCCAGGCAAG
R:
ACCAACAAAGGAAGGCACAGG
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]