RnoEX0079304 @ rn6
Exon Skipping
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187803014-187811703:-
Coord C1 exon
chr2:187811531-187811703
Coord A exon
chr2:187810084-187810234
Coord C2 exon
chr2:187803014-187803194
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTGGCTGTCTTCAGGCA
3' ss Score
9.83
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AACGACGTAGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCACCTTCCTGAAAGCCCAGCTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCTCCCTCTGTTCCCCGCATCTACGCAGTCTTTACCTCCCAGTG
Seq A exon
GCAGGTTGGTGGGACCAGGAGCTCAGCAGTCTGTGCCTTCTCTCTCACGGACATTGAGCGAGTCTTTAAAGGAAAGTACAAGGAGCTGAACAAAGAAACCTCCCGCTGGACCACTTACAGGGGCTCAGAGGTCAACCCGAGGCCAGGCAGC
Seq C2 exon
TGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATGGATGAGCATGTGGTAGGAGCTCCCCTGCTGGTGAAGTCTGGCGTGGAGTACACACAGCTTGCCGTGGAAACAGCTCAGGGCCTTGACGGGAGCAGCCATGTGGTCCTTTACCTGGGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737-'20-28,'20-27,22-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.066
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.7=100)
A:
PF0140314=Sema=FE(12.0=100)
C2:
PF0140314=Sema=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCACCTTCCTGAAAGC
R:
TGTACTCCACGCCAGACTTCA
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]