RnoEX0079330 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13548781-13553974:+
Coord C1 exon
chr17:13548781-13548990
Coord A exon
chr17:13552421-13552518
Coord C2 exon
chr17:13553288-13553974
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCTTGTCTTCCAGAGG
3' ss Score
9.4
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCCAGCAGACATCCGCTTCATCTGGGAGAAGAACAGGCGTGTCCTGGAGACATGTGTACCTATGCAGACCCATGCGCTGCCTGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACGGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGGAACCAGACCTCAAAGGTTCACGTCACTGTGATGAGACATG
Seq A exon
AGGCACTACAGCAGGAAAAGTGGAACCAGGAGCTTGCTGCATGGCGCCTGGTGGCTGGGGAGCATGACCGGCTGATGCAGGGCTGGAGGAAGGCATGG
Seq C2 exon
GAAAGCTGCAGCAAGGATACCTTCTAGCCGCCTGAGACAGCGCTCAGTGGATCCCACGTGACCTCGTTGGCAGCAGCTGCAGATGTACGTGGTGAAGGCACAGCACCCACAGCGCCAAGCTTCTGTGTCTTGGCTGGCTCCATACAGCGTTTGCCACAGCCTGAGTGTCCCTTCTAGAGGCTGGGAATCGCAAGGCTTGAACTGCACAGGCCTGAGACAGAGAGCAAGACCTCCTAACATGTAGCAGAAAGCTAAGCCTGCCTGGCAGACAGGGAGCTGAGCTGTTTAGGAGGCTCCCCCCACCCCACCCCCAGCAGATGACAGAGCAGTCCGTGAAGGCTAACCCGATGGCAGCCACCCTGCATTCTTCCCAGGACTTCATGCACTCCTGCTCCTCCCCCAGGGTCAGCACAGCTAACCTCGCTCCGGTTCTGCTGATGTGGCCACCCAGGAACAGGTTGATCTACTGGGATAGGAGAGCTGAGACTCCACATGAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(72.5=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACGGAATACAGCTGCTC
R:
TTCACCACGTACATCTGCAGC
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]