HsaEX0057107 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89360787-89363950:-
Coord C1 exon
chr9:89363741-89363950
Coord A exon
chr9:89363430-89363527
Coord C2 exon
chr9:89360787-89362428
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGACCCTGCTTGTTTTCCAGAAG
3' ss Score
7.27
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
Seq A exon
AAGTGACCCACCAGGAGAGGTGGACCAGAGAGCTCTCTGCCTGGAGGGCTGTGGCTGGGGAGCACGACCGGATGATGCAGAGCTGGAGGAAGGCGTGG
Seq C2 exon
GAAAGCTGTAGCAAGGACACCCTGTAGCCACCAGGAAGGAGTCCCTGACACCGACCTCAACCCCAACAAGACCCTGCTGCCACTGACCACAGCCACCCCCGGAGAAGGCCTGGTCCCCCACAACTGTGAACTGTCTTGCCCAAGCCTGCTCTGAACACAGCCATTGGGCCACCACCTGATGGGCAGAGGCGGGACAGTGGAGAAGCCTGGAACCCAAGTGGGCCTGTGACAGGAACTAAGACTTAAAAAATTAGGTGCTTACCTGGGACAGTAAGTTCTGTCTGGCACAAGCAGGTAACCAGGATGGCTAACAGGCTTTGATAGCTGCTCGTGAACTAAAACAGCAGGGTGTGTGCAGGTTCCTCCTCTACGGTCAGGCAGCAGGCTCTGAAGGCTGATCCTACACCGTCCCAGTGACTCCCCTTGACAGAGTGCCCCCACCCCCTAATAGCCAACAGGGTTAGCATGGCCAGCACAGATCGCTGCTTTTATTGATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764-'71-71,'71-68,72-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTTGCTGTGATGAGAC
R:
GCTTGGGCAAGACAGTTCACA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development