HsaEX0057107 @ hg19
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Coordinates
chr9:91975706-91979566:-
Coord C1 exon
chr9:91978656-91979566
Coord A exon
chr9:91978345-91978442
Coord C2 exon
chr9:91975706-91977343
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGACCCTGCTTGTTTTCCAGAAG
3' ss Score
7.27
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CACAGCGCTGCAAGAAAGGGGGTCCTAGGGGACACAGGCCACACAGGTGTGCTTTGAAAAATGGCAATTAAGGTCAAAGAGCAGGAAGTCCACAGGACGGGCCAAGGCCAAGGCTCCCGCTGGCCATGGGGAAGCCACCTCCAGGGCAGTCCCAGGGACTGAATTGGAAGTTGTCCCAAGTCACTTCAGGTCCAACTGGGACAGCAGAGGTAACCCCCCTGCACCCTCATGGGGCAGCTTCTTTGGGTCCTAAATGTGGACTCAGAGGTGGAAACGGTCTGTGTCCCCAGGTCCTGCAGACATTCGCTTTGTCTGGGAGAAGAATGGGCGAGCTCTGGAGACCTGTGTCCCTGTGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCACTCAGCTGGCTGCAGGACGCCATCAGGGAAAGCGCTGAGTATCGCTGCTCTGTCCTCTCCTCAGCAGGGAACAAGACTTCGAAGGTGCAGGTTGCTGTGATGAGACCTG
Seq A exon
AAGTGACCCACCAGGAGAGGTGGACCAGAGAGCTCTCTGCCTGGAGGGCTGTGGCTGGGGAGCACGACCGGATGATGCAGAGCTGGAGGAAGGCGTGG
Seq C2 exon
GAAAGCTGTAGCAAGGACACCCTGTAGCCACCAGGAAGGAGTCCCTGACACCGACCTCAACCCCAACAAGACCCTGCTGCCACTGACCACAGCCACCCCCGGAGAAGGCCTGGTCCCCCACAACTGTGAACTGTCTTGCCCAAGCCTGCTCTGAACACAGCCATTGGGCCACCACCTGATGGGCAGAGGCGGGACAGTGGAGAAGCCTGGAACCCAAGTGGGCCTGTGACAGGAACTAAGACTTAAAAAATTAGGTGCTTACCTGGGACAGTAAGTTCTGTCTGGCACAAGCAGGTAACCAGGATGGCTAACAGGCTTTGATAGCTGCTCGTGAACTAAAACAGCAGGGTGTGTGCAGGTTCCTCCTCTACGGTCAGGCAGCAGGCTCTGAAGGCTGATCCTACACCGTCCCAGTGACTCCCCTTGACAGAGTGCCCCCACCCCCTAATAGCCAACAGGGTTAGCATGGCCAGCACAGATCGCTGCTTTTATTGATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTTGCTGTGATGAGAC
R:
GCTTGGGCAAGACAGTTCACA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)