MmuEX0020898 @ mm9
Exon Skipping
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51780898-51786867:-
Coord C1 exon
chr13:51786658-51786867
Coord A exon
chr13:51782652-51782749
Coord C2 exon
chr13:51780898-51781615
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGCTTGTCTTCCAGAGG
3' ss Score
9.48
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCCAGCAGATATCCGATTCATTTGGGAGAAGAACAGGCATGCCCTGGAGACGTGTGTACCTATGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACCGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGAAACCAGACTTCAAAGGTTCACATCACTGTGATGAGACACG
Seq A exon
AGGCACTGCAGCAGGAAAAGTGGAGCCAGGAACTTGCTACGTGGCGTGCTGTGGCCGGGGAGCATGACAGGCTGATGCAGGGCTGGAGGAAGGCATGG
Seq C2 exon
GAAAGCTGCAGCAAGGATACCTTCTAGCCACCAGAGGCAGTTCTGGACTGATCCCAAGTGACCTTGTTGACACCAGCTGCAGACGTACCTGATGAACGCACAGCACCTACTGCACCAAGCTATTGTGTCTTGGCTGGCTCCACACTGCCATTCGCCACAGCCTGAGTGTCCCTTCCTAGAGGCTGGGAATCTCTAGGCCTGAACCCCAGTAGGCCTGAGACAGAACAAGACCTTTCTACATTAGCTCTTATGTAGCAGAAAGATCAGTCTGCCTGGCAGAAACAGAAGGCTCCTCACCCAAGCAGATGACAGAGCAGCAGGTCTGTCATGAAGGCTAACCGGATGGCAGACACCCTGCATTCTCCCCAGGACTTCCCTGCACTCCTGTCCCTCCCCCAGGGCCAGAACAGCTAATCTCCACTCCCCTTCTGTAGATCTAACTCAAGTCTGCTGCTGTGGCCACCTAGGAAACAGGTTGTTCCAGGGGCTAAGCTGGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059386=Self-incomp_S1=PU(59.0=98.0)
A:
PF059386=Self-incomp_S1=FE(38.6=100)
C2:
PF059386=Self-incomp_S1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATCCAAGAAACCACCG
R:
TCTGCAGCTGGTGTCAACAAG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: