MmuEX0020898 @ mm10
Exon Skipping
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51685529-51691498:-
Coord C1 exon
chr13:51691289-51691498
Coord A exon
chr13:51687283-51687369
Coord C2 exon
chr13:51685529-51686246
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCAGAGGCACTGCAGCAG
3' ss Score
-7.6
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCCAGCAGATATCCGATTCATTTGGGAGAAGAACAGGCATGCCCTGGAGACGTGTGTACCTATGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACCGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGAAACCAGACTTCAAAGGTTCACATCACTGTGATGAGACACG
Seq A exon
CAGGAAAAGTGGAGCCAGGAACTTGCTACGTGGCGTGCTGTGGCCGGGGAGCATGACAGGCTGATGCAGGGCTGGAGGAAGGCATGG
Seq C2 exon
GAAAGCTGCAGCAAGGATACCTTCTAGCCACCAGAGGCAGTTCTGGACTGATCCCAAGTGACCTTGTTGACACCAGCTGCAGACGTACCTGATGAACGCACAGCACCTACTGCACCAAGCTATTGTGTCTTGGCTGGCTCCACACTGCCATTCGCCACAGCCTGAGTGTCCCTTCCTAGAGGCTGGGAATCTCTAGGCCTGAACCCCAGTAGGCCTGAGACAGAACAAGACCTTTCTACATTAGCTCTTATGTAGCAGAAAGATCAGTCTGCCTGGCAGAAACAGAAGGCTCCTCACCCAAGCAGATGACAGAGCAGCAGGTCTGTCATGAAGGCTAACCGGATGGCAGACACCCTGCATTCTCCCCAGGACTTCCCTGCACTCCTGTCCCTCCCCCAGGGCCAGAACAGCTAATCTCCACTCCCCTTCTGTAGATCTAACTCAAGTCTGCTGCTGTGGCCACCTAGGAAACAGGTTGTTCCAGGGGCTAAGCTGGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107-'6-9,'6-8,7-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059386=Self-incomp_S1=PU(59.0=98.0)
A:
PF059386=Self-incomp_S1=FE(38.6=100)
C2:
PF059386=Self-incomp_S1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATCCAAGAAACCACCG
R:
TCTGCAGCTGGTGTCAACAAG
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types