GgaEX6050311 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43446316-43448867:-
Coord C1 exon
chrZ:43448664-43448867
Coord A exon
chrZ:43446918-43447015
Coord C2 exon
chrZ:43446316-43446360
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATCCCATTTACAATTTTCAGATA
3' ss Score
7.24
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTCCAGATGACTCCCATTTTGTCTGGAAGAAGAATGGACAGGAAATGAAGGCATGCATCACTGAGCAGGCTCACAGGCTGTTTGATGGCAGAGTGCATGTCTTAAGTTGGGTGAAAGATTCAGTATCAGGAAACACAAAATATAAATGTTCATTCATCTCAAGGATTGGGAACACAACATCAGAAGTGCTCATCAAAGTGGAAG
Seq A exon
ATAGTGTTGGTAAGGATGGATGGACCAAAGAATTTGATACCTGGAGAACTGCTATCAGTGAACATGACAAGATGATGCAAAACTGGAGGAAGACATGG
Seq C2 exon
GAAAGTTGCAACAAGAAAAGCAGCCTCTCATGTACAAAGGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'22-30,'22-29,24-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(72.5=95.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACTGAGCAGGCTCACAG
R:
GAGGCTGCTTTTCTTGTTGCA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]