GgaEX6050311 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrZ:42864368-42866398:-
Coord C1 exon
chrZ:42866380-42866398
Coord A exon
chrZ:42864949-42865042
Coord C2 exon
chrZ:42864368-42864391
Length
94 bp
Sequences
Splice sites
3' ss Seq
CATTTACAATTTTCAGATAGTGT
3' ss Score
-0.47
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GAAGTGATAAAAAGAAATG
Seq A exon
TGTTGGTAAGGATGGATGGACCAAAGAATTTGATACCTGGAGAACTGCTATCAGTGAACATGACAAGATGATGCAAAACTGGAGGAAGACATGG
Seq C2 exon
GAAAGTTGCAACAAGAAAAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024457-'2-4,'2-3,3-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]