RnoEX0086323 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78106638-78107274:+
Coord C1 exon
chr4:78106638-78106767
Coord A exon
chr4:78106901-78107026
Coord C2 exon
chr4:78107183-78107274
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTCTGTTCTCTGCAGCAT
3' ss Score
11.48
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GATGCCGCTGTCCTCCTGGGCTCTTCCTCCAGGACTCTCACTGTCTGCCCCTCTCTGAATGCCCCTGTCTGGTGGGCCAAAAGCTGATGCAGCCCGGGCTGGCCTTCCTGTTGGACAACTGCAGCCAGTG
Seq A exon
CATATGTGAGAGTGGGATACTGCTGTGTAAGCCAGCGGCCTGCTCCCAGTCCTGTGGCTGGTCTGCCTGGTCCCCATGGACCGCTTGTGATCACTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
Seq C2 exon
GTCCCCCACCAACCCTCCCGCGGCATTTGGAGGTTCCCCGTGTGAAGGTGACAGGCAGGAACTGCAGGCCTGCTACACAGACTGTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'56-59,'56-58,57-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(32.8=45.5)
A:
PF0009014=TSP_1=PU(42.0=48.8)
C2:
PF0009014=TSP_1=PD(56.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCGCTGTCCTCCTGG
R:
TGTCCCACAGTCTGTGTAGCA
Band lengths:
221-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]