GgaEX1055626 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:425693-426213:+
Coord C1 exon
chr2:425693-425822
Coord A exon
chr2:425921-426046
Coord C2 exon
chr2:426122-426213
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACCCAGCTTCTGTCCCCAGCGT
3' ss Score
6.17
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GCTGCCGGTGCCCGCCAGGGCTCTTCCTGCAGGAGGGCACCTGTGTCAATGCCAGCCAGTGCCACTGTCACCAGGGCCAGCAGCGCTGGCTGCCCAGCCAAGTCTTCCTGAGGGATGGCTGCAGCCAATG
Seq A exon
CGTGTGCCGGGATGGGGTGGTGACATGTGAGGACACGGCCTGTCCCATCGCCTGCGCCTGGTCTGCCTGGTCACTGTGGACCCTCTGTGACCGCAGCTGTGGTGTGGGCATGCAGGAGAGGTTCAG
Seq C2 exon
GTCCCCATCCAACCCCGCAGCAGCCAATGGTGGAGCGCCGTGCGATGGGGACACCCGGGAAGTGCGTGAGTGCCACACACCCTGTGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'54-54,'54-53,55-54
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(42.6=45.5)
A:
PF0009014=TSP_1=PU(42.0=48.8)
C2:
PF0009014=TSP_1=PD(56.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTCTTCCTGCAGGAG
R:
GTGGCACTCACGCACTTCC
Band lengths:
190-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]