MmuEX6004224 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48473865-48474523:+
Coord C1 exon
chr6:48473865-48473994
Coord A exon
chr6:48474150-48474275
Coord C2 exon
chr6:48474432-48474523
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCCTGTTCTCTGCAGCAT
3' ss Score
10.93
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GATGCCGCTGCCCTCCTGGGCTCCTCCTCCAGGACTCTCACTGTCTGCCCCTCTCTGAATGTCCCTGCCTGGTGGGCCAAAAGCTGATACAGCCCAGACTGGCCTTCTTGCTGGACAACTGCAGCCAATG
Seq A exon
CATATGTGAGAAGGGGACACTGCTGTGCAAGCCAGGGGCCTGCTCCCAGTCCTGTGGCTGGTCTGCCTGGTCCCCCTGGACTGCTTGTGATCGCTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
Seq C2 exon
GTCCCCTACCAACCCTCCTGTGGCATTTGGAGGTTCCCCGTGTGAAGGTGACAGGCAGGAACTGCAGGCCTGCTACACAGACTGTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'50-70,'50-59,61-70=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(40.8=45.5)
A:
PF0009014=TSP_1=PU(42.0=48.8)
C2:
PF0009014=TSP_1=PD(56.0=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGGCTCCTCCTC
R:
TGTCCCACAGTCTGTGTAGCA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types