GgaEX1055626 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:332138-332658:+
Coord C1 exon
chr2:332138-332267
Coord A exon
chr2:332366-332491
Coord C2 exon
chr2:332567-332658
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACCCAGCTTCTGTCCCCAGCGT
3' ss Score
6.17
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GCTGCCGGTGCCCGCCANGGCTCTTCCTGCAGGAGGGCACCTGTGTCAATGCCAGCCAGTGCCACTGTCACCAGGGCCAGCAGCGCTGGCTGCCCAGCCAAGTCTTCCTGAGGGATGGCTGCAGCCAATG
Seq A exon
CGTGTGCCGGGATGGGGTGGTGACATGTGAGGACACGGCCTGTCCCATCGCCTGCGCCTGGTCTGCCTGGTCACTGTGGACCCTCTGTGACCGCAGCTGTGGTGTGCGCATGCAGGAGAGGTTCAG
Seq C2 exon
GTCCCCATCCAACCCCGCAGCAGCCAATGGTGGAGCGCCGTGCGATGGGGACACCCGGGAAGTGCGTGAGTGCCACACACCCTGTGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'35-39,'35-38,36-39=AN
Average complexity
A_C1
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(43.5=45.5)
A:
PF0009014=TSP_1=PU(42.0=48.8)
C2:
PF0009014=TSP_1=PD(56.0=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTGCAGGAGGGCA
R:
GTGGCACTCACGCACTTCC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]