HsaEX0061885 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149500563-149501175:+
Coord C1 exon
chr7:149500563-149500692
Coord A exon
chr7:149500776-149500901
Coord C2 exon
chr7:149501084-149501175
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTCCCTCCCCTGCAGCGT
3' ss Score
9.56
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GATGCCGCTGTCCCCCGGGGCTCCTTCTGCATGACACTCGCTGCCTGCCCCTCTCTGAGTGCCCCTGCCTGGTGGGCGAAGAGCTGAAGTGGCCAGGGGTGTCCTTCCTCCTGGGCAACTGCAGCCAATG
Seq A exon
CGTGTGTGAGAAGGGGGAGTTGCTGTGCCAACCAGGGGGCTGCCCCCTGCCCTGCGGCTGGTCAGCCTGGTCCTCCTGGGCTCCCTGCGACCGCTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
Seq C2 exon
GTCTCCCTCCAACCCTCCGGCAGCCTGGGGGGGTGCCCCGTGTGAAGGTGACCGGCAGGAACTGCAGGGCTGCCACACAGTGTGTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'63-64,'63-63,64-64
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTCCTTCTGCATGACA
R:
CAGTTCCTGCCGGTCACCTT
Band lengths:
178-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)