HsaEX0061884 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149500315-149500901:+
Coord C1 exon
chr7:149500315-149500437
Coord A exon
chr7:149500563-149500692
Coord C2 exon
chr7:149500776-149500901
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCACATACTCCCAGGAT
3' ss Score
6.66
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ACTGCGAGCTGGGCCGTGTGTATGTGAGTGCCGATCTGTGCCAGAAGGGGCTGGTGCCCCCATGCCCACCCTCCTGCCTGGATCCCAAGGCCAACAGAAGCTGCAGTGGGCATTGTGTGGAAG
Seq A exon
GATGCCGCTGTCCCCCGGGGCTCCTTCTGCATGACACTCGCTGCCTGCCCCTCTCTGAGTGCCCCTGCCTGGTGGGCGAAGAGCTGAAGTGGCCAGGGGTGTCCTTCCTCCTGGGCAACTGCAGCCAATG
Seq C2 exon
CGTGTGTGAGAAGGGGGAGTTGCTGTGCCAACCAGGGGGCTGCCCCCTGCCCTGCGGCTGGTCAGCCTGGTCCTCCTGGGCTCCCTGCGACCGCTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'62-63,'62-62,63-63
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGCCGTGTGTATG
R:
CTGAACCTGGCCCTCACTCC
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)