HsaEX0061884 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149803227-149803813:+
Coord C1 exon
chr7:149803227-149803349
Coord A exon
chr7:149803475-149803604
Coord C2 exon
chr7:149803688-149803813
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCACATACTCCCAGGAT
3' ss Score
6.66
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ACTGCGAGCTGGGCCGTGTGTATGTGAGTGCCGATCTGTGCCAGAAGGGGCTGGTGCCCCCATGCCCACCCTCCTGCCTGGATCCCAAGGCCAACAGAAGCTGCAGTGGGCATTGTGTGGAAG
Seq A exon
GATGCCGCTGTCCCCCGGGGCTCCTTCTGCATGACACTCGCTGCCTGCCCCTCTCTGAGTGCCCCTGCCTGGTGGGCGAAGAGCTGAAGTGGCCAGGGGTGTCCTTCCTCCTGGGCAACTGCAGCCAATG
Seq C2 exon
CGTGTGTGAGAAGGGGGAGTTGCTGTGCCAACCAGGGGGCTGCCCCCTGCCCTGCGGCTGGTCAGCCTGGTCCTCCTGGGCTCCCTGCGACCGCTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX2-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGCCGTGTGTATG
R:
CTGAACCTGGCCCTCACTCC
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development