MmuEX6004225 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48423661-48424274:+
Coord C1 exon
chr6:48423661-48423783
Coord A exon
chr6:48423864-48423993
Coord C2 exon
chr6:48424149-48424274
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTCCTTGCACCCAGGAT
3' ss Score
9.42
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACTGTGAGCCAGGCCTTGTGCATGTGAATGCTGAGCTGTGCCAGAAGGGGCTAGTGCCCCCATGTCCACCCTCCTGCCTGGACCCCGAAGCCAACAGAAGCTGCAGTGGGCACTGTATGGAAG
Seq A exon
GATGCCGCTGCCCTCCTGGGCTCCTCCTCCAGGACTCTCACTGTCTGCCCCTCTCTGAATGTCCCTGCCTGGTGGGCCAAAAGCTGATACAGCCCAGACTGGCCTTCTTGCTGGACAACTGCAGCCAATG
Seq C2 exon
CATATGTGAGAAGGGGACACTGCTGTGCAAGCCAGGGGCCTGCTCCCAGTCCTGTGGCTGGTCTGCCTGGTCCCCCTGGACTGCTTGTGATCGCTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(57.1=66.7)
A:
PF0182612=TIL=PD(40.8=45.5)
C2:
PF0009014=TSP_1=PU(42.0=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCCAGGCCTTGTG
R:
CTGAACCTGGCCCTCACTCC
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: