RnoEX6013485 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78106433-78107026:+
Coord C1 exon
chr4:78106433-78106555
Coord A exon
chr4:78106638-78106767
Coord C2 exon
chr4:78106901-78107026
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGACCTTTCCCTGCACCCAGGAT
3' ss Score
7.08
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ACTGTGAGCCAGGCCGTGTGCATGTGAATGCTGAGTTGTGCCAGAAGGGACTACTACCCCCATGTCCACCCTCCTGCCTGGACCCCGAAGCCAACAGAAGCTGCAGTGGGCACTGTGTGGAAG
Seq A exon
GATGCCGCTGTCCTCCTGGGCTCTTCCTCCAGGACTCTCACTGTCTGCCCCTCTCTGAATGCCCCTGTCTGGTGGGCCAAAAGCTGATGCAGCCCGGGCTGGCCTTCCTGTTGGACAACTGCAGCCAGTG
Seq C2 exon
CATATGTGAGAGTGGGATACTGCTGTGTAAGCCAGCGGCCTGCTCCCAGTCCTGTGGCTGGTCTGCCTGGTCCCCATGGACCGCTTGTGATCACTCCTGTGGCTCTGGAGTGAGGGCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(65.6=95.2)
A:
PF0182612=TIL=PD(32.8=45.5)
C2:
PF0009014=TSP_1=PU(42.0=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCCAGGCCGTGT
R:
CTGAACCTGGCCCTCACTCC
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]