GgaEX6017988 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:425486-426046:+
Coord C1 exon
chr2:425486-425608
Coord A exon
chr2:425693-425822
Coord C2 exon
chr2:425921-426046
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATGCCGTGCCGCGGGGCAGGCT
3' ss Score
2.85
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGTGTGGCCCTGGGATGGTGTTGGTGCAGGAAGGGGACTGTGTGCAGGGCCTGGTGCCACCCTGTCCCCAAGTCTGCGGGGACCTGAGTGCCACCAGCAGCTGCCAGAGCCCCTGCCAGGAGG
Seq A exon
GCTGCCGGTGCCCGCCAGGGCTCTTCCTGCAGGAGGGCACCTGTGTCAATGCCAGCCAGTGCCACTGTCACCAGGGCCAGCAGCGCTGGCTGCCCAGCCAAGTCTTCCTGAGGGATGGCTGCAGCCAATG
Seq C2 exon
CGTGTGCCGGGATGGGGTGGTGACATGTGAGGACACGGCCTGTCCCATCGCCTGCGCCTGGTCTGCCTGGTCACTGTGGACCCTCTGTGACCGCAGCTGTGGTGTGGGCATGCAGGAGAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'53-53,'53-52,54-53=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(55.3=61.9)
A:
PF0182612=TIL=PD(42.6=45.5)
C2:
PF0009014=TSP_1=PU(42.0=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGATGGTGTTGGTG
R:
CTGAACCTCTCCTGCATGCC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]