GgaEX6017988 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:331931-332491:+
Coord C1 exon
chr2:331931-332053
Coord A exon
chr2:332138-332267
Coord C2 exon
chr2:332366-332491
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATGCCGTGCCGCGGGGCAGGCT
3' ss Score
2.85
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGTGTGGCCCTGGGATGGTGTTGGTGCAGGAAGGGGACTGTGTGCAGGGCCTGGTGCCACCCTGTCCCCAAGTCTGCGGGGACCTGAGTGCCACCAGCAGCTGCCAGAGCCCCTGCCAGGAGG
Seq A exon
GCTGCCGGTGCCCGCCANGGCTCTTCCTGCAGGAGGGCACCTGTGTCAATGCCAGCCAGTGCCACTGTCACCAGGGCCAGCAGCGCTGGCTGCCCAGCCAAGTCTTCCTGAGGGATGGCTGCAGCCAATG
Seq C2 exon
CGTGTGCCGGGATGGGGTGGTGACATGTGAGGACACGGCCTGTCCCATCGCCTGCGCCTGGTCTGCCTGGTCACTGTGGACCCTCTGTGACCGCAGCTGTGGTGTGCGCATGCAGGAGAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'34-38,'34-37,35-38=AN
Average complexity
A_C1
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(54.3=59.5)
A:
PF0182612=TIL=PD(43.5=45.5)
C2:
PF0009014=TSP_1=PU(42.0=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGATGGTGTTGGTG
R:
CTGAACCTCTCCTGCATGCG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]