DreEX6096597 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40209404-40210848:+
Coord C1 exon
chr24:40209404-40209526
Coord A exon
chr24:40210503-40210632
Coord C2 exon
chr24:40210723-40210848
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTAATTTATTTTTATTTTAGGAT
3' ss Score
10.32
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTGCACTGGAGGAATGATCCTGATGGACGAGTCTGACTGTTTGGCAGGAAAATTCAGCCCGTGTCCCCTGACCTGCTCTGACCTTCATTCAGAGAGAAACTGCACATTAAACTGCACTGCAG
Seq A exon
GATGTCATTGCCCTCCTGGGCTCTTCCTCCAGTCTGGCCGGTGTGTGAATGTCAGTGAATGTGAATGTTTCTGGAACGGGTCGCTCATTCAGCCGGGTCAGGACGTCAGTAACTCCAGCTGCAGCTCCTG
Seq C2 exon
TGTGTGTAAAGATGGGCGTGTCCTATGTGATGAGTCCAGCTGTGTCGCTCGATGTGATTGGTCGGCCTGGTCTTCGTGGACATCATGTGACAGCAGCTGCGGGACAGGAGTACAGCACCGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'51-55,'51-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(53.3=57.1)
A:
PF0182612=TIL=PD(44.4=45.5),PF0009313=VWC=PU(37.5=47.7)
C2:
PF0009313=VWC=PD(60.7=79.1),PF0009014=TSP_1=PU(41.2=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACTGGAGGAATGATCC
R:
TAGCGGTGCTGTACTCCTGTC
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]