RnoEX0101748 @ rn6
Exon Skipping
Gene
ENSRNOG00000050600 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr8:23193181-23195928:+
Coord C1 exon
chr8:23193181-23193307
Coord A exon
chr8:23193492-23193552
Coord C2 exon
chr8:23195613-23195928
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTAATTTTTTTCCCTTTTAGGGG
3' ss Score
10.89
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACTCAGTGACTTTCGAGGATGTAACTGTGAACTTCAGCCGTGATGAGTGGGCTCTGCTGGACACTTCTCAGAGGGAACTGTACCGAGATGTGATGCTCGAAATCTTCACTAACTTGGCTTCTGTTG
Seq A exon
GGGGAAATTGGGAAAACCAGAGCACTGGGGATCAGTGTAAAACCCAGGAAAGAGACATAAG
Seq C2 exon
CGCTCACATAGAACAGAGACCACGTGAATGGGAAAGTTCACCCAGGGAAATCGTCACCCAGGTTCCAGTTCTTAAACAGAAGAATGTTCTCCCCGGAGTAAAACCCTACGAATGCAGAGTATGCGGGAAAGTTTACTCATGTTTGTCCTCTCTTAAAAGGCACACTCAGTGTCATAGCAAGCATGCATGGTGTGGGAGTCACATATTCGGAGGAACATCATACCAGTGTAAGGACTGTGGGAAAACATTCATTTTTCAAAGTTCATTTCGAATACACGAGAGGACCCACACTGGAGAGAAACCCTATAAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050600-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.548 C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PU(65.4=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACACTTCTCAGAGGGA
R:
GAACCTGGGTGACGATTTCCC
Band lengths:
136-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]