RnoEX6004673 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190100308-190113010:+
Coord C1 exon
chr1:190100308-190100486
Coord A exon
chr1:190109952-190110086
Coord C2 exon
chr1:190112881-190113010
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTTTATTCCTTAATTAGCAC
3' ss Score
4.47
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AAACTGGAATGAAATGGAATAACATATTCCTACCAACGGATTCAGACAGCCTTTTATTTACCTATGTGCTAGGAATGCTTTTAGTTGATGCTTTCATATATGGCCTTGTGGCCTGGTACATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCAAAGCCGTGGAACTTTTTCTTGATG
Seq A exon
CACTCTTACTGGTTTGGAGAATCACGTCAACAAAAACCCGAAATAACCCAATTTTGTAAGAGAGTTGAAAGCAAGTATTTTGAAGTTGAACCAACTGATTTGACAGCAGGCATCCAGATCAAACACCTACACAAG
Seq C2 exon
GTATTCCAAGAGAATAACATCACTAAAGTCGCCATCAATGACTTGTCTTTGAACGTATATGAGGGACAGATTACTGTTCTTTTAGGACATAATGGGGCAGGAAAGTCCACTACTCTGTCCATCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'11-11,'11-10,13-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
ENSRNOT00000037026fB296
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGGATTCAGACAGCCTT
R:
AGTGGACTTTCCTGCCCCATT
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]