RnoEX6010344 @ rn6
Exon Skipping
Gene
ENSRNOG00000020778 | Chrnb2
Description
cholinergic receptor nicotinic beta 2 subunit [Source:RGD Symbol;Acc:2350]
Coordinates
chr2:189095192-189096785:-
Coord C1 exon
chr2:189096536-189096785
Coord A exon
chr2:189095409-189095554
Coord C2 exon
chr2:189095192-189095236
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTTCCCTTGCCCAGGGG
3' ss Score
8.67
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGAAGAGCAACCGGGACCGGCAAGAAGCCGGGACCTCCCCTCGTTGCAGGAACTGCCCGTTCAGTGAGCACTTTAGACCTGGAGGCCGCGAGCCCCACCCGGGAGCAGGCGGCTGCGCGGCTTCAGCACCACGGACAGCGCTCGACCCGCAGCCCTAGTATCCGAGAGGCTGCGCGCTATGCTGGCTGCATGGCCGGGCACTCCAACTCAATGGCGCTGTTCAGCTTCAGCCTTCTTTGGCTGTGCTCAG
Seq A exon
GGGTTTTGGGAACTGACACAGAGGAGCGGCTAGTGGAGCATCTCTTAGATCCCTCCCGCTATAACAAGCTGATTCGTCCAGCTACTAACGGCTCTGAGCTGGTGACTGTACAGCTCATGGTATCATTGGCTCAGCTCATTAGTGTG
Seq C2 exon
CACGAGCGGGAGCAGATCATGACCACCAATGTCTGGCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020778-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTCGTTGCAGGAACT
R:
TGGTGGTCATGATCTGCTCCC
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]