GgaEX1015444 @ galGal4
Exon Skipping
Gene
ENSGALG00000003005 | CHRNB4
Description
neuronal acetylcholine receptor subunit beta-4 precursor [Source:RefSeq peptide;Acc:NP_990150]
Coordinates
chr10:3103512-3110402:+
Coord C1 exon
chr10:3103512-3104441
Coord A exon
chr10:3108967-3109112
Coord C2 exon
chr10:3110358-3110402
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCATATCCGATGTCTTACAGGAA
3' ss Score
7.55
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TTTACTAACAGGTCCTACGGCACAAAGTTATATCCAGCTCTTCTCACGCTGCCGTTCCCAACCCCTGCATTTATTAACCAGAAAGCCTTCTAAATGTTATCTAGTAGCACAAATTAAGCAGTTTTGTTCTGCCGATCATGTTCCTTAGCTTGCTCTTTCATTTCCTCTCATTCAACATTATCACATTATGTTCCCTCTTCTTATGTGCTTTTCCTCTACACAAAGCTCTTTAAACAGCTGCAAAGGGGGAGGGACCACAATGCTTATGAAAACTCCACTTTGCAGAATGCTTCTGCCAGGTCCTACTGTCTGTCTCTTTCCAGGGATTTAATACCTCCAAGATTCAGGATTGCTTTTACATCTCTTGCTTGTGCAACCCTGACAACAGAGCCTACTGCGAGCTGTCTTAATTGAAGAGCAGTAACCACCTCTTCCTGTTATTGCCATGAGGAATACGTACACTCTCTTTCTCTTTGTAGTGGGCTCCTTCTACTTCAACG
Seq A exon
GAAGCACTGCAGCAGATGCTGAGGAAAAGCTAATGAACCACCTACTGAGTCCTGACAGGTACAACAAGTTAATTCGCCCAGCTGTCAACTCATCCCAGTTGGTATCTATAGAACTGCAGGTTTCCCTGGCACAGCTCATCAGTGTG
Seq C2 exon
AACGAACGAGAGCAGATCATGACTACAAATGTCTGGCTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGCTTCTGCCAGGTCCT
R:
TAGTCATGATCTGCTCTCGTTCG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]