GgaEX1015444 @ galGal3
Exon Skipping
Gene
ENSGALG00000003005 | F1NWX4_CHICK
Description
NA
Coordinates
chr10:4546017-4552032:+
Coord C1 exon
chr10:4546017-4546075
Coord A exon
chr10:4550601-4550742
Coord C2 exon
chr10:4551988-4552032
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCGATGTCTTACAGGAAGCAC
3' ss Score
-5.13
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ATGAGGAATACGTACACTCTCTTTCTCTTTGTAGTGGGCTCCTTCTACTTCAACGGTAA
Seq A exon
CACTGCAGCAGATGCTGAGGAAAAGCTAATGAACCACCTACTGAGTCCTGACAGGTACAACAAGTTAATTCGCCCAGCTGTCAACTCATCCCAGTTGGTATCTATAGAACTGCAGGTTTCCCTGGCACAGCTCATCAGTGTG
Seq C2 exon
AACGAACGAGAGCAGATCATGACTACAAATGTCTGGCTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(19.9=85.4)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAATACGTACACTCTCTTTCT
R:
TGGTTTAGCCAGACATTTGTAGTCA
Band lengths:
102-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]