RnoEX6011192 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:217025578-217029336:+
Coord C1 exon
chr2:217025578-217025631
Coord A exon
chr2:217029052-217029105
Coord C2 exon
chr2:217029229-217029336
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATACAACTTTATGTTTACAGGGT
3' ss Score
5.86
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGTCCCCCTGGTCCATCCGGTGAAGCTGGCCCTCCAGGTCCACCTGGAAAGAGA
Seq A exon
GGTCCGCCTGGAGCTTCCGGTTCCGAAGGAAGGCAAGGAGAGAAAGGTGCTAAG
Seq C2 exon
GGAGAAGCTGGAGCTGAAGGACCTCCTGGGAAAACTGGCCCGGTCGGACCTCAGGGTCCTTCTGGAAAGCCTGGTCCAGAAGGTCTTCGAGGCATCCCTGGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'62-64,'62-63,63-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(42.1=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCATCCGGTGAAGCT
R:
AGACCTTCTGGACCAGGCTTT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]