GgaEX6044064 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12008386-12014298:+
Coord C1 exon
chr8:12008386-12008439
Coord A exon
chr8:12013732-12013785
Coord C2 exon
chr8:12014191-12014298
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTCCTCTTTCACAGGGA
3' ss Score
10.47
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTCCACCAGGTCCTTCAGGAGAAGCTGGCCCACCTGGTCCACCTGGAAAGAGA
Seq A exon
GGACCTCCTGGAGCAACTGGAGCTGAAGGCAGACAAGGTGAAAAAGGTGCAAAG
Seq C2 exon
GGTGAACCTGGTGCAGAAGGAGCTCCTGGAAAAACAGGTCCAGTTGGTCCTCAGGGACCAGCAGGAAAACCTGGCCCTGAAGGTCTCCGGGGCATTCCTGGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'58-59,'58-58,59-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(6.0=27.8)
C2:
PF0139113=Collagen=PU(41.6=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGTCCTTCAGGAGAA
R:
GACCTTCAGGGCCAGGTTTTC
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]