RnoEX6011204 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216996118-217007524:+
Coord C1 exon
chr2:216996118-216996171
Coord A exon
chr2:217002233-217002340
Coord C2 exon
chr2:217007417-217007524
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTCTCATGGTCTAGGGC
3' ss Score
8.65
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGCGCACCTGGGTTGAAAGGAGGAGAAGGTCCCCAAGGCCCGCAGGGTCCAATT
Seq A exon
GGCTCTCCTGGAGAGCGAGGCTCTGCAGGCACAGCAGGCCCAATTGGTTTGCCAGGACGTCCAGGCCCTCAGGGCCCTCCTGGTCCAGCTGGAGAAAAAGGTGCTCCG
Seq C2 exon
GGAGAAAAGGGTCCTCAGGGGCCTGCAGGTAGAGATGGGGTCCAAGGCCCTGTGGGTCTCCCAGGGCCTGCTGGTCCTGCTGGCTCTCCTGGAGAAGATGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'47-51,'47-50,48-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCACCTGGGTTGAAAG
R:
CTTGTCTCCATCTTCTCCAGGA
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]