RnoEX6013452 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78125685-78126535:+
Coord C1 exon
chr4:78125685-78125809
Coord A exon
chr4:78126019-78126065
Coord C2 exon
chr4:78126275-78126535
Length
47 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTGTCCCTCCTACAGTGT
3' ss Score
9.99
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGACTGCTGGAGCAGGATGGAGGTTGTATTCTCCCAGAGCAGTGTAACTGTTGGCATACCTCAGGAGAGGGAGCTAGGGTGACCCTAGCCCCTGGGCACCGCCTGCAGCTGGGTTGTAAGGAATG
Seq A exon
TGTATGCCAGAGCGGAGAGCTGCAGTGTTCCAGCCAAGGGTGCGAAG
Seq C2 exon
GTCTTCTGCCTTTGACTGGATGGTCAGAGTGGTCACCTTGTGGGCCCTGCCTGCCCCAAAGTGCCCTAGCCCCTGACTCCAGAACTGCCCTGGAGGTGCACTGGCCTCTGAACACATCGGTCACTCTACTGGCTTCAGAGCAGTACCGGCACCGGCTCTGCTTGGACCCTGAGACGGGGCGGCCCTGGGCAGGAGATCCTGCCCTTTGCACTGTGCCTCTCAGTCAGCAGCGCCTGTGCTCTGACCCTGGAGCCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'94-99,'94-98,95-99=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.0=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCTGGGTTGTAAGGAA
R:
GTGACCGATGTGTTCAGAGGC
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]