GgaEX6017965 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:438202-438885:+
Coord C1 exon
chr2:438202-438326
Coord A exon
chr2:438418-438464
Coord C2 exon
chr2:438664-438885
Length
47 bp
Sequences
Splice sites
3' ss Seq
AGCTTTTTGTTCCCTCACAGCGT
3' ss Score
9.31
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGCTCCTGGAGCAGCGCAGTGCCTGTGTGCCCCCCGAGCAGTGTGACTGCCTGCACACCAATGAGTCAGGCGACCTGGTGACACTGTCCCCAGGGGACATCATCCTGCTGGGATGCAAGGAGTG
Seq A exon
CGTGTGCCAGGACGGAGCCCTGCAGTGCAGCAGTGAAGGCTGCCAGG
Seq C2 exon
GGCTGCTCCCACTGAGCCCCTGGTCGGAGTGGACGCCTTGCAGCACCTGCCTGCCCCTGTTCCCATCCCACCTGGGGGACGTCACACCCCACGTGTCAGTGCAGCACCGCTACCGAGCCTGCCTGGACCCACAGAGCGGCCAGCCCTGGTCTGGAGACACAGCTGTGTGCTCAGCTGAGCTGCAGCAGCAGCGGCTCTGCCCAGACCCCGACATCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'88-88,'88-87,89-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.0=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGATGCAAGGAGTG
R:
GTAGCGGTGCTGCACTGAC
Band lengths:
133-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]