MmuEX6004192 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48492483-48493420:+
Coord C1 exon
chr6:48492483-48492607
Coord A exon
chr6:48492863-48492909
Coord C2 exon
chr6:48493142-48493420
Length
47 bp
Sequences
Splice sites
3' ss Seq
CTGATGTGTTCCTCCTACAGCGT
3' ss Score
10.28
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCCTGCTGGAGCAGGCTGGAAGCTGCATTCTCCCAGAGCAGTGTAACTGCTGGCATATCTCAGGCGAGGGAGCTAGGGTGACCCTGGCCCCTGGGGACCGCTTGCAGCTGGGCTGTAAGGAATG
Seq A exon
CGTCTGCCGGAGGGGAGAGCTGCAGTGTTCCAGCCAAGGGTGCGAAG
Seq C2 exon
GTCTTCTGCCTCTGACTGGATGGTCAGAGTGGTCACCTTGTGGGCCCTGCCTGCCCCAAAGTGCCCTAGCCCCTGCCTCCAGGACTGCCCTGGAGGGGCACTGGCCTCTGAACACATCAGACCTCCCTCCACCCTCAGTCACTCTGCTGGCTTCAGAGCAGTACCGGCACCGCCTCTGCTTGGACCCTGAGACGAGGAGGCCCTGGGCAGGAGATCCTGCTCTTTGTACTGTGCCTCTCAGCCAGCAACGCCTCTGCCCTGACCCCGGAGCCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'99-107,'99-106,100-107
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.0=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATTCTCCCAGAGCAGTG
R:
ACAAGGTGACCACTCTGACCA
Band lengths:
143-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types