HsaEX0061901 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149520813-149521761:+
Coord C1 exon
chr7:149520813-149520937
Coord A exon
chr7:149521175-149521221
Coord C2 exon
chr7:149521483-149521761
Length
47 bp
Sequences
Splice sites
3' ss Seq
CTGACTACCCCCTCCCACAGTGA
3' ss Score
7.81
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GGGCTGCTGGAGCAGGCTGGGGGCTGCATTCCCCCAGAGGAGTGTAACTGCTGGCATACCTCAGCAGCAGGAGCCGGGATGACCCTGGCCCCTGGGGACCGCCTGCAGCTGGGCTGTAAGGAGTG
Seq A exon
TGAATGCCGGCGTGGGGAGCTGCACTGCACCAGCCAGGGCTGTCAAG
Seq C2 exon
GTCTTCTGCCTCTGAGTGAGTGGTCCGAGTGGTCGCCCTGTGGGCCCTGCCTGCCGCCCAGCGCCCTGGCCCCTGCCTCCAGGACTGCCCTAGAGGAGCACTGGCTCCGAGACCCAACTGGCCTCTCCCCCACCTTGGCCCCGCTGCTGGCTTCAGAGCAGCACCGCCACCGGCTCTGTCTGGATCCTGCGACAGGGAGGCCCTGGACTGGAGCCCCTCACCTCTGCACCGCACCCCTCAGCCAGCAGCGCCTCTGCCCTGACCCTGGAGCCTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCCCCCAGAGGAGTGTA
R:
GACCACTCGGACCACTCACTC
Band lengths:
134-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)