BtaEX6029367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113483676-113484684:+
Coord C1 exon
chr4:113483676-113483800
Coord A exon
chr4:113484053-113484099
Coord C2 exon
chr4:113484406-113484684
Length
47 bp
Sequences
Splice sites
3' ss Seq
CTGACCACCCCCTCCCACAGTGA
3' ss Score
7.48
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGGCTACTGGAGCAGGCCGGAGGCTGTGTACCCCCAGAACAGTGTAACTGCCAGCACGTCTCAGGAGAAGGAGCTGGGGTGACCCTGGCCCCTGGGGACCGCCTGCAGCTGGGCTGCAAAGAGTG
Seq A exon
TGAATGCCAGCGCGGGGAGCTACAGTGCACCAGCCAAGGCTGTCAAG
Seq C2 exon
GTCTTCTGCCTCTGAGCGGCTGGTCTGAGTGGTCACCCTGTGGGCCCTGCCTGCCCCTCGGCCTGCTGGCCCCTGCCTCCAGGGCTGCCCTAGAGGAGCGCTGGCCCCAGGACACAGCTGGCCTGTCCCCCACCTCGGCCCCCACGCTGGCTTCGGAGCAGCACCGCCACCGCCTCTGTTTGGACCCTGAGACAGGGAGGCCGTGGGCCGGGGACCCAGACCTCTGCACTGTGCCCCTCAGCCAACAACGCCTCTGTCCAGACCCTGGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'103-103,'103-102,104-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.0=33.3),PF053758=Pacifastin_I=PU(37.5=28.6)
A:
PF053758=Pacifastin_I=FE(50.0=100)
C2:
PF053758=Pacifastin_I=PD(9.4=3.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTACCCCCAGAACAGTGT
R:
GGTGACCACTCAGACCAGCC
Band lengths:
138-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]