RnoEX6013471 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78116544-78117442:+
Coord C1 exon
chr4:78116544-78116735
Coord A exon
chr4:78116856-78117026
Coord C2 exon
chr4:78117242-78117442
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCTCCTTGGTGCAGTGG
3' ss Score
7.19
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
TGTCTGGAGACTGGTGTCCATGGTCAGAGTGGACAGCGTGCTCCCAGCCCTGCAGGGGCCAAACAAGGACCCGCTCCAGGGCCTGTGTCTGTCCTGCTCCCCAGCATGGGGGTGCCCCATGCCCTGAGGAGGCAGGGGAAACAGGAGTGCAGCATCAAATGGAGGCCTGCCCTAACCCCACTGCATGCCCAG
Seq A exon
TGGATGGGGCCTGGAGCCCTTGGGGGTCATGGTCTCCCTGTGATGCATGCCTGGGGCAGTCCTATCGGAGCCGGATGTGCAGCCATCCTCCTCCCTCTGATGGAGGCACACCTTGTCTTGGGGGCCATCAGCAGAGTCGTCCTTGTCGGAACAGCTCCACCCCTTGTACAG
Seq C2 exon
ACTGTGGAGGTGGCCAGGATCTCTTACCCTGTGGGCAGCCATGTCCTCATTCCTGTCAGGATCTGTCCCTTGGCAGTACATGCCAGCCAGGCTCCTCAGGCTGCCAGTCTGGCTGTGGGTGTCCCCCAGGCCAGCTTTCCCAGGATGGGCTCTGTGTGTTCCCAGCGGACTGTCACTGCCACTTCCAGCCTAAAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'74-78,'74-77,75-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=PD(8.8=4.6),PF0009014=TSP_1=WD(100=89.2)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=WD(100=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAGGAGTGCAGCATCA
R:
CTGGAAGTGGCAGTGACAGTC
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]