DreEX0064568 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40229417-40231714:+
Coord C1 exon
chr24:40229417-40229617
Coord A exon
chr24:40230932-40231102
Coord C2 exon
chr24:40231508-40231714
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTTTGTGTGTAGTTG
3' ss Score
7.98
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TGGATGGAGACTGGTGTCAGTGGTCTGCCTGGACACCCTGCTCTAAGACCTGTGGGCTGGAGTGGGTGTCACGCTACAGGAGCTGCTCCTGTCCCGAACCCATGTCTGGAGGAGCTCCCTGTGCAGACCAGCAGGAGGAGCACGCCGGGCTGGGGGTCCAGATCCAGAGACAGCCCTGCCCATCCATCTCCTACTGTCCCG
Seq A exon
TTGACGGTTCGTGGGGCTCCTGGAGCTCGTGGTCAGAGTGTGACGCATGCGCGGGTGTCTCAGTCAGACAGAGGCAGTGTCACAGTCCTCCAGCGCGCTTTGGAGGTCTGCCCTGCATGGGGGAGAGTCTGCAGAGTCGCGCGTGTCATGATAACACCACCGTCTGCTCAG
Seq C2 exon
ACTGTGGAGGGGGCCAGCAGGAGTGGGTGTGTGGGAAACCGTGTCCTCGCTCCTGCTCCGATCTTCACGGAGATACGGAGTGTGTGGACGATCCAGAATCCTGCAGCCTTAGCTGTGGATGTCCAGGACACACACTGCTGCAAGACGGAGTGTGTGTGGAGCCAGAGATGTGCCGCTGTAAATACCACAACACCAGCATCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'72-77,'72-76,73-77
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=89.7)
A:
PF0009014=TSP_1=PU(86.7=89.7)
C2:
PF0009014=TSP_1=PD(11.7=10.0),PF0182612=TIL=WD(100=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAGACCTGTGGGCTGGAG
R:
TCCACACACTCCGTATCTCCG
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]