MmuEX6004209 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48483442-48484352:+
Coord C1 exon
chr6:48483442-48483633
Coord A exon
chr6:48483752-48483922
Coord C2 exon
chr6:48484152-48484352
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTCTTCTTGGTGCAGTGG
3' ss Score
6.56
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
TGTCTGGAGACTGGTGTCCGTGGTCCAAGTGGACAGCATGCTCCCAGCCCTGCAGGGGCCAAACAAGGACCCGCTCCAGGGCCTGTGTCTGCCCTGCTCCCCAGCATGGGGGTTCTCCATGTCCTGAGGAGTCAGGGGGAACAGGAGTACAGCATCAAATGGAGGCCTGCCCTAATGCCACTGCATGCCCAG
Seq A exon
TGGATGGAGCCTGGAGCCCTTGGGGGCCATGGTCTTCCTGTGACGCATGCCTGGGGCAGTCCTATCGAAGCCGGGTGTGCAGCCATCCTCCCATCTCTGACGGAGGCAAACCTTGTCTTGGGGGCTATCAGCAGAGTCGCCCTTGTCGGAACAGCTCCACCCTGTGTACAG
Seq C2 exon
ATTGTGGAGGGGGCCAGGATCTCTTACCCTGTGGGCAGCCATGTCCTCATTCCTGCCAGGATCTGTCCCTTGGCAGTACATGCCAGCCAGGCTCAGCAGGCTGTCAGTCTGGCTGTGGGTGTCCCCCAGGCCAGCTTTCCCAGGATGGGCTCTGTGTGTTTCCAGTTGACTGTCACTGCCACTTCCAGCCTAGAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'68-91,'68-81,79-91=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=89.2)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=WD(100=83.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGGGAACAGGAGTACA
R:
CTGGAAGTGGCAGTGACAGTC
Band lengths:
250-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types