BtaEX6029382 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113473850-113474826:+
Coord C1 exon
chr4:113473850-113474041
Coord A exon
chr4:113474134-113474304
Coord C2 exon
chr4:113474623-113474826
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTATTTTTGCCGCAGTGG
3' ss Score
7.75
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
TGCCTGGCGCCTGGTGCCCGTGGTCAGAGTGGACAGCGTGCTCCCAGCCCTGCCAGGGACAGACGAGGACCCGCTCCAGGGCCTGCAGCTGCCCGGCTCCACAGCATGGCGGGGCCCCATGCCCCGGGGAGGCAGGGGAGGCGGGGGCCCAGCATCAGAGGGAGACCTGTGCCAGCACCCCCGAGTGCCCAG
Seq A exon
TGGATGGAGCCTGGAGCCCGTGGGGACCGTGGTCTCCCTGTGACGTGTGCCTGGGGCAGTCCCATCGCAGCCGAGAGTGTAGCTGGCCCCCCACCTCTGAGGGAGGCCGGCCCTGCCCTGGGGGCCACAGGCAGAGTCGCCCCTGCCAGGGCAATTCCACTCAGTGCACGG
Seq C2 exon
ACTGTGCAGGTGGCCAGGATCTTCTCCCCTGTGGGCAGCCCTGCCCCCGCTCCTGCGAGGACCTGTCCCCTGGGGTCGAGTGCCAGCCAGACTCGATGGGCTGCCAGCAGCCCCGCTGTGGGTGTCCCCCTGGCCAGCTGTCCCAGGACGGCCTTTGCGTGACCCCCTCCCAGTGCCGCTGCCAGTACCAGCCTGGAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'84-82,'84-81,85-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=PD(6.2=3.1),PF0009014=TSP_1=WD(100=89.2)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=WD(100=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCATCAGAGGGAGA
R:
ATGGCTCCAGGCTGGTACTG
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]