HsaEX0061888 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149511560-149512463:+
Coord C1 exon
chr7:149511560-149511751
Coord A exon
chr7:149511862-149512032
Coord C2 exon
chr7:149512263-149512463
Length
171 bp
Sequences
Splice sites
3' ss Seq
GATCTGTCTTCCTGCCACAGTGG
3' ss Score
7.34
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGCCCGGAGGCTGGTGCCCGTGGTCGGAGTGGACAATGTGCTCCCAGCCCTGCAGGGGCCAGACCAGGAGCCGCTCCAGGGCCTGTGCCTGCCCCACTCCTCAGCACGGTGGTGCCCCGTGCACTGGAGAGGCTGGGGAGGCAGGGGCCCAGCATCAGAGGGAGGCCTGCCCCAGCTACGCCACGTGCCCAG
Seq A exon
TGGACGGAGCCTGGGGCCCATGGGGGCCATGGTCTCCCTGCGACATGTGCTTGGGGCAGTCCCACCGGAGCCGGGCGTGCAGCCGGCCCCCCACCCCTGAGGGAGGGAGGCCCTGCCCTGGGAACCACACGCAGAGTCGCCCTTGCCAGGAAAATTCCACCCAGTGCACAG
Seq C2 exon
ACTGCGGGGGTGGCCAGAGTCTGCATCCCTGTGGGCAGCCCTGCCCCCGCTCCTGCCAGGACCTGTCCCCTGGGAGTGTGTGCCAGCCAGGCTCTGTGGGCTGCCAGCCCACTTGTGGGTGCCCCCTGGGCCAGCTCTCCCAGGACGGGCTGTGCGTGCCCCCAGCCCACTGCCGCTGCCAGTACCAGCCTGGAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'85-85,'85-84,86-85
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACAATGTGCTCCCAG
R:
CACACACTCCCAGGGGACAG
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)