HsaEX0061888 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149814472-149815375:+
Coord C1 exon
chr7:149814472-149814663
Coord A exon
chr7:149814774-149814944
Coord C2 exon
chr7:149815175-149815375
Length
171 bp
Sequences
Splice sites
3' ss Seq
GATCTGTCTTCCTGCCACAGTGG
3' ss Score
7.34
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGCCCGGAGGCTGGTGCCCGTGGTCGGAGTGGACAATGTGCTCCCAGCCCTGCAGGGGCCAGACCAGGAGCCGCTCCAGGGCCTGTGCCTGCCCCACTCCTCAGCACGGTGGTGCCCCGTGCACTGGAGAGGCTGGGGAGGCAGGGGCCCAGCATCAGAGGGAGGCCTGCCCCAGCTACGCCACGTGCCCAG
Seq A exon
TGGACGGAGCCTGGGGCCCATGGGGGCCATGGTCTCCCTGCGACATGTGCTTGGGGCAGTCCCACCGGAGCCGGGCGTGCAGCCGGCCCCCCACCCCTGAGGGAGGGAGGCCCTGCCCTGGGAACCACACGCAGAGTCGCCCTTGCCAGGAAAATTCCACCCAGTGCACAG
Seq C2 exon
ACTGCGGGGGTGGCCAGAGTCTGCATCCCTGTGGGCAGCCCTGCCCCCGCTCCTGCCAGGACCTGTCCCCTGGGAGTGTGTGCCAGCCAGGCTCTGTGGGCTGCCAGCCCACTTGTGGGTGCCCCCTGGGCCAGCTCTCCCAGGACGGGCTGTGCGTGCCCCCAGCCCACTGCCGCTGCCAGTACCAGCCTGGAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACAATGTGCTCCCAG
R:
CACACACTCCCAGGGGACAG
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development