RnoEX6015278 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161869269-161871828:-
Coord C1 exon
chr4:161871617-161871828
Coord A exon
chr4:161870300-161870509
Coord C2 exon
chr4:161869269-161869393
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGTACCACTGTTCTGTTCAGGAC
3' ss Score
7.53
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATAATATGATATACTGGGAGAAAGACGAGAAACCCAAGGCAGACAGCTCTCCATCATTCATTCCTTCTGCACTTTCCGGTGAGACAGAGAAGACGTGCTATGTGCTGTTGGCTGTCCTTTCCCAGGACACTCCGGACCTCGATTATGCCAGCAAGATTGTGCAGTGGCTTGCCCAGCGGATGAACTCCCATGGAGGCTTCTCTGCCGTGCAG
Seq A exon
GACACCACAGTGTGCCTTCTTGCCCTGACCCGATACATGAAGTTAACCGGCTCTAACCCTCAAAACACCATCACCCTGAGCACGGAAGAGTCTGAGGAGGTTTTCCACATTAACAGAGATAACCGCCTTCTGGTACAGCACTCAAAAGTTTCCGAGGGCCACAGACGATACACGGTGGATGTGGAAGGAGACGGATGCTCGTTCACCCAG
Seq C2 exon
GCTACCCTCAGGTACAATGTGCCCCTTCCTAAGGAGGCCTCGGGGTTTTCCCTTTCTGTGAAAACCAGAAAGAGCAACTCTTCGGATGAACTCCAGACCAAGTTTGACCTCATGGTGACCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.136 C2=0.024
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.2=100)
A:
PF076789=A2M_comp=PD(5.2=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGAAACCCAAGGCAGAC
R:
TGAGGTCAAACTTGGTCTGGAG
Band lengths:
301-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]