BtaEX6024042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101178113-101180874:+
Coord C1 exon
chr5:101178113-101178324
Coord A exon
chr5:101179843-101180052
Coord C2 exon
chr5:101180750-101180874
Length
210 bp
Sequences
Splice sites
3' ss Seq
GCTTGTACTGTTCTGTGCAGGAT
3' ss Score
7.92
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATAATGTGATATATTGGGGAAAAGCGAAGAAACTCAAGACAGAGGCATCTCCACTCTTTATTCCTTGGGCACCTTCTGCTGAGATAGAGAAGACTTGCTATGTGCTGTTGGCTATCATTTCCCAGAAAAACCCTGACCTGACCTACGCTAGTAAGATTGTTCAGTGGCTTGCCCAACAGATGAATTCTCACGGAGGCTTCTCCTCCCCTCAG
Seq A exon
GATACGCCCGTCTGCCTTCTTGCCATAACCCGCTACATGAATTTAATCTTCTCTGATGATCAAGTCACTGTCAGCTTAAGCAGTGAAGAATTCAACAAGATTTTCCAGGTTAATGGTGATAATCACTTACTGGTTCAACGTTCAGAACTAACAAAAGCAGGTGGACAATACACGGTAGATGTGGAAGGACGAGGTTGTGCATTTATCCAG
Seq C2 exon
GCTACCATGAAGTATAATGTGCTACTACCTAAAAAGGAATCTGGATTTTCCCTTTCCTTACAAATAGTAAAGAAAAACTCTTCGGATGTATTCCAGAGTAATTTTGACCTGACAGTAACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.5=100)
A:
PF076789=A2M_comp=PD(5.3=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAGGCATCTCCACTCT
R:
CTGAGGGTTACTGTCAGGTCA
Band lengths:
301-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]