MmuEX6007316 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128493950-128496478:-
Coord C1 exon
chr6:128496267-128496478
Coord A exon
chr6:128494943-128495152
Coord C2 exon
chr6:128493950-128494074
Length
210 bp
Sequences
Splice sites
3' ss Seq
TATACCACTGTTCTGTTCAGGAC
3' ss Score
7.2
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATAATATGATATACTGGGAGAGAGATGAGAAACCCGAGACAGACAACTCTCCATCATTCATTCCTTCGGCACTTTCTGGTGAGACAGAGAAGACGTGCTATGTGCTGCTGGCTGTCCTTTCCCAGGACACTCAGGACCTTGATTATGCCAGCAAGATTGTGCAGTGGCTTGCCCAGCGGATGAACTCCCATGGAGGCTTCTCTGCCATGCAG
Seq A exon
GACACCACAGTGTGCCTTCTCGCTCTAACCCAATACATGAAGTTAACCGGCTCTAACCCTCAAAACACCATCACGCTGAGCTCAGAGGAGTCTGAGGAGGTTTTCTATGTTAACAGAAATAAACGCCTTCTGGTCCAGCACTCAAAAGTATCCAAAGGCCACCAACAATACACAGTGGATGTAGAAGGAGATGGATGCTCATTTATCCAG
Seq C2 exon
GCCACCCTCAGGTACAACGTGCCACTTCCTAAGGAGGCCTCAGGATTTTCCCTTTCCGTGAAAACTGGAAAAAGCAACTCTTCAGATGAATTCCAGACCAAGTTTGAACTCACGGTGACCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.071 C2=0.024
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.2=100)
A:
PF076789=A2M_comp=PD(5.2=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGACAGACAACTCTCCA
R:
TGAGGGTCACCGTGAGTTCAA
Band lengths:
304-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: