HsaEX0055025 @ hg38
Exon Skipping
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31116357-31121283:-
Coord C1 exon
chr12:31121139-31121283
Coord A exon
chr12:31117041-31117484
Coord C2 exon
chr12:31116357-31116469
Length
444 bp
Sequences
Splice sites
3' ss Seq
TGTCGATTGTAAATCCCAAGTAA
3' ss Score
0.28
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
GCTCCGGTAGATTGCAAACGACCTGCTTTCTTCCTGATCCCGGGCTGCGTTCGGACCCCTGTGGTATAGTAAATCCCAAGTAAGGTACCTGCGGTCGGCAGATCTGAGCTTTCTTCTTGGACACCTAATACCCAGGGTCCTCCAG
Seq A exon
TAAGGTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAGGTGGGTCCTAAGGATCTTAGGAACCGCGATGGGGGTCCTAAGCCCGGGGGGAAGGGGGGCTGGCTCTCAGTCCCCGCCTCGCGTGGCGTGCCTCCCCCGCTTGCGATGCGAGTCCTAAGAGCCGGGGGTGGGAGGGACTGGCTCTCAGTCTCCCCCTCGCGGTGGGTGCCTCCCCGCCCTGCAATGGGGATCCTAAGAGCCAGGCGGGGAAGAGGGGCTCTTCTCTAAGAATCAAAACACTGTCACCTTTAGCAGTGAAGGATCCAGTGAGATCCAGTTTAACGGTCATAACCGCCTACTGGTCCAACGTTCAGAAGTAACACAGGCACCTGGACAATACACAGTAGATGTGGAAGGACGCGGTTGTACATTTATCCAG
Seq C2 exon
GCCACCCTTAAGTACAATGTTCTCCTACCTAAGAAGGCATCTGGATTTTCTCTTTCCTTGGAAATAGTAAAGAACTACTCTTTGACTGTTTTTGACCTCACAGTGAACCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGTAGATTGCAAACGA
R:
TGAGGTTCACTGTGAGGTCAA
Band lengths:
257-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development