HsaEX0055025 @ hg19
Exon Skipping
Gene
ENSG00000177359 | RP11-551L14.1
Description
NA
Coordinates
chr12:31269291-31270414:-
Coord C1 exon
chr12:31270354-31270414
Coord A exon
chr12:31269975-31270101
Coord C2 exon
chr12:31269291-31269403
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAAAACACTGTCACCTTTAGCAG
3' ss Score
3.29
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
GTACCTGCCGTGGGCAGATCTGAGCTTTCTTCTTGGACACCCCATACCCACAGTCCTCCAG
Seq A exon
CAGTGAAGGATCCAGTGAGATCCAGTTTAACGGTCATAACCGCCTACTGGTCCAACGTTCAGAAGTAACACAGGCACCTGGACAATACACAGTAGATGTGGAAGGACGCGGTTGTACATTTATCCAG
Seq C2 exon
GCCACCCTTAAGTACAATGTTCTCCTACCTAAGAAGGCATCTGGATTTTCTCTTTCCTTGGAAATAGTAAAGAACTACTCTTTGACTGTTTTTGACCTCACAGTGAACCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX1-36/38=35-37
Average complexity
S*
Mappability confidence:
81%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGCAGATCTGAGCTTTC
R:
TGAGGTTCACTGTGAGGTCAA
Band lengths:
165-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)