RnoEX6015809 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2448381-2450360:-
Coord C1 exon
chr3:2450244-2450360
Coord A exon
chr3:2450044-2450168
Coord C2 exon
chr3:2448381-2449013
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTAACCCCTCATTCTTCCAGGGG
3' ss Score
7.72
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATTTTCCCTTCCCCTTTGGCTGGCTCAGCGGCTACTTGGCCATCCTCGTTGGAGCAGGCTTAACCTTCTTGCTTCAGAGCAGTAGTGTCTTCACGGCAGCCATTGTGCCTCTCATGG
Seq A exon
GGGTTGGGGTGATCAACCTGGAACGGGCCTACCCCCTCTTCCTGGGCTCCAACATTGGCACCACCACCACAGCCTTACTGGCTGCCCTGGCCAGCCCTGCAGACACGTTACTCTTCGCAGTTCAG
Seq C2 exon
GTTGCTCTCATCCACTTCTTTTTCAACCTGGCTGGCATACTGCTGTGGTACCTGGTGCCTGTCTTGAGACTGCCAATTCCATTGGCCAAGCGCTTTGGGGACCTGACTGCACAATACCGCTGGGTAGCCATTGTCTACTTACTACTCACCTTCCTTCTGCTACCCCTAGCAGCCTTTGGACTTTCCCTGGCTGGGGGTTCAGTGCTGGCTGCAGTGGGGGGTCCTCTGGTGGGGCTGGTACTCCTTATCATCCTGGTTAATGTCCTGCAACGACACCGACCATCTTGGTTGCCTCGCCGTCTTCAATCCTGGGCCTGGCTGCCACTTTGGCTCCATTCTCTGGAGCCCTGGGACCGCCTGGTGACTGGTTGTTGCCCCTTCAAGGCCTACAGCAACTCCCATATGACCAGCAAAGTGGCTCACTGCTATGAGAACCCACAAGTCATAGCTTCTCAGCAGTTGTGAGAAGTGGGTGCCCATCAAAACCCAGTTCCACTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-'18-23,'18-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(28.5=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.9=100)
C2:
PF0269010=Na_Pi_cotrans=PD(20.4=18.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCCTTCCCCTTTGGCTG
R:
CTACCCAGCGGTATTGTGCAG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]