DreEX6078627 @ danRer10
Exon Skipping
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1089260-1093632:+
Coord C1 exon
chr23:1089260-1089376
Coord A exon
chr23:1089847-1089971
Coord C2 exon
chr23:1093483-1093632
Length
125 bp
Sequences
Splice sites
3' ss Seq
TACATCATCTTCCTCTTTAGGTA
3' ss Score
10.54
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
ATTTCCCCTTCCCCTTCGCCTGGGTTACAGGATACCTGGCCATCCTCGTGGGAGCCGGAATGACCTTCATTGTTCAGAGCAGCTCCGTCTTCACCTCCGCCATCACTCCTCTAGTCG
Seq A exon
GTATTGGTGTGATCAGTTTGGAGAGAGCATATCCACTCACACTGGGCTCCAACATCGGCACAACCACCACTGCTATACTGGCGGCCATGGCCAGTCCTGGAGAAACACTGGCCAACTCGCTACAG
Seq C2 exon
ATTTCTCTGTGTCACTTCTTTTTCAACATCGCTGGTATCCTGCTGTGGTACCCCATCCCCTTCACACGTGTGCCCATCCGACTGGCCAAAGCGCTGGGCAACCGTACAGCTAAATACCGCTGGTTTGCGGGCCTGTATCTCATTCTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864-'14-19,'14-16,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTTCGCCTGGGTTA
R:
ATGAGATACAGGCCCGCAAAC
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]