MmuEX6017685 @ mm10
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53068129-53071664:+
Coord C1 exon
chr5:53068129-53068245
Coord A exon
chr5:53068344-53068468
Coord C2 exon
chr5:53068995-53071664
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTCTATGCTTTCCCAACAGGTA
3' ss Score
11.46
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATTTCCCCTTTCCCTTTGCTTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATCGTGCAAAGCAGCTCTGTGTTCACGTCTGCCATGACTCCACTCATCG
Seq A exon
GTATTGGGGTGATCAGCATTGAGAGGGCATATCCACTCACGTTGGGCTCCAACATTGGCACCACCACCACCGCCATTCTGGCTGCTTTAGCCAGCCCAGGCAACACCTTGAGGAGTTCTCTCCAG
Seq C2 exon
ATTGCCCTGTGCCATTTCTTCTTCAACATCTCTGGAATATTGCTTTGGTACCCAATCCCATTCACCCGTCTGCCCATCCGTCTGGCTAAAGGCCTAGGCAACATCTCTGCCAAGTATCGCTGGTTCGCAGTCTTCTATCTCATCTTCTTCTTCTTTGTGACCCCGCTGACAGTGTTTGGCCTGTCTCTGGCAGGCTGGCCAGTGCTGGTGGGCGTGGGCGTACCCATCATCCTGCTGCTGCTCCTGGTTCTGTGCCTCCGGATGCTGCAGTTCCGCTGCCCTCGCATCTTGCCCCTGAAGCTCCGGGACTGGAATTTCCTACCCTTGTGGATGCACTCTCTGAAACCCTGGGACAACGTCATCTCCCTGGCCACCACCTGCTTCCAGAGGCGTTGCTGCTGCTGTTGCCGCGTGTGCTGCCGTGTCTGCTGCATGGTGTGCGGCTGCAAGTGCTGTCGCTGCAGCAAGTGCTGCAGGGACCAGGGAGAGGAAGAGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCCTTTGCTTGGCTGA
R:
ACTGCGAACCAGCGATACTTG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types