BtaEX0033083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46745199-46749777:+
Coord C1 exon
chr6:46745199-46745366
Coord A exon
chr6:46747144-46747268
Coord C2 exon
chr6:46749071-46749777
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTCATCCCCCCAGGTA
3' ss Score
11.6
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCAGCACATCTTCGTGAATTTCAACCTCTCAGATGCTATTGTTGGCACCATCCTGCTGATCACCTCCCTGCTGATCCTCTGTACCTGCCTGATCCTAATTGTCAAGCTCCTGGGCTCTGTGCTCAGGGGGCAGGTGGCTGCTGTCATCAAGAAGACAATCAACACTG
Seq A exon
GTATCGGTGTGATATCCATTCAAAGAGCATATCCACTAACGCTAGGTGCCAACATTGGCACCACCACCACCGCCATCTTGGCCGCCTTAGCCAGCCCAGGCAGTACTTTGAAAAGCTCACTCCAG
Seq C2 exon
ATTGCCTTGTGCCACTTTTTCTTCAACATCTCAGGCATCATCCTGTGGTACCCAATCCCGTTCACTCGCCTGCCCATCCGCCTGGCCAAAGGGCTGGGCAACATCTCATCTAAGTACCGCTGGTTCGCCATCGTCTACTTGATCGTCTTCTTCTTCCTGATCCCTCTGGCGGTGTTTGGCCTCTCCCTGATTGGCTGGCCAGTGCTGGTGGGCGTGGCGTCGCCCATCGTCCTTGTGATCTTACTGGTGGTGGTCCTCAAGATCCTGCAGTCCTTCTGCCCTGGCTCCTTGCCACAGAAGCTCCGAAGCTGGGACTTCCTGCCCTTTTGGATGCGCTCCCTGGAGCCCTGGGACAAGCTCATCACCTCCCTCACCAGCTGCTTCCAGATGCGCTGCTGCTGCTGCTGCCGGGTCTGCTGCCGCCTCTGCTGTGGGCTGTGTGGCTGCTCCAAGTGCTGCCGTTGCAGCAAGTGCTGCGAAGACCTGGAGGAGGGGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCTCCCTGCTGATCCTC
R:
ACGATCAAGTAGACGATGGCG
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development