GgaEX1053293 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75884660-75886410:-
Coord C1 exon
chr4:75886294-75886410
Coord A exon
chr4:75886082-75886206
Coord C2 exon
chr4:75884660-75885329
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCTATTTCTTTTCTTCTAGGCA
3' ss Score
10.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTTCCCATTTCCTTTTACTTGGCTGGCTGGATACCTGGCTATGCTTGCAGGGGCTGGCATGACTTTCGTTGTTCAAAGTAGTTCTGTCTTCACGTCTGCTATTACACCTCTTGTTG
Seq A exon
GCATTGGTGTTATAAGCATTGAGCGTTCTTATCCCCTCACCCTAGGAGCTAACATTGGCACAACCACAACAGCTATACTTGCAGCTTTAGCAAGCCCAGGGAGTACATTAAAATATTCATTACAG
Seq C2 exon
ATTGCCTTGTGCCACTTTTTCTTCAATGTCTCTGGGATTATCCTGTTTTACCCGCTGCCTTTTACCCGGCTGCCAATCCGCATGAGCAAGAGCTTGGGAAACATAACAGCCAAGTACAGATGGTTTGCTATATTTTATCTTCTCATCTGCTTCTTTCTTTTGCCTTTGTTTGTATTTGGTCTGTCACTGGCGGGCTGGCCAGTTCTTTTGGGTGTTTGCCTTCCCCTGCTGGCTCTGTTTATTGCGGTGATTGTAATTAATATTATGCAGACGAGGCGGCCACATTCACTGCCTGAGAAGCTTCAAAACTGGGACTTCCTACCCATCTGGATGCACTCCCTAGAGCCCTGGGACAATATGATTATGTCTTCACTCGCCTTTTGTGGGAAGCATTGCTGCGGATTCTGCAAGTGCTGCAAAGTCAATGCAGAACAGGAGGGTGCCAAAGATAATCAGCTAAAAACTATGGAGGTTTATGAAAACACCATTGCAATGGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'16-17,'16-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=16.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCATGACTTTCGTTGT
R:
CCGCCAGTGACAGACCAAATA
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]